J4_8VVP_007
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUCCCC*GGGCCGG*CCACGC*GGAGCGAG
- Length
- 28 nucleotides
- Bulged bases
- 8VVP|1|WA|C|1243, 8VVP|1|WA|G|1271, 8VVP|1|WA|A|1272, 8VVP|1|WA|G|1273, 8VVP|1|WA|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVP|1|WA|U|986
8VVP|1|WA|C|987
8VVP|1|WA|U|988
8VVP|1|WA|C|989
8VVP|1|WA|C|990
8VVP|1|WA|C|991
8VVP|1|WA|C|992
*
8VVP|1|WA|G|1074
8VVP|1|WA|G|1075
8VVP|1|WA|G|1076
8VVP|1|WA|C|1077
8VVP|1|WA|C|1078
8VVP|1|WA|G|1079
8VVP|1|WA|G|1080
*
8VVP|1|WA|C|1242
8VVP|1|WA|C|1243
8VVP|1|WA|A|1244
8VVP|1|WA|C|1245
8VVP|1|WA|G|1246
8VVP|1|WA|C|1247
*
8VVP|1|WA|G|1270
8VVP|1|WA|G|1271
8VVP|1|WA|A|1272
8VVP|1|WA|G|1273
8VVP|1|WA|C|1274
8VVP|1|WA|G|1275
8VVP|1|WA|A|1276
8VVP|1|WA|G|1277
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain AA
- L29
- Chain C
- uL4
- Chain E
- L6
- Chain F
- uL30
Coloring options: