J4_8VVR_005

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VVR|1|WA|C|216, 8VVR|1|WA|C|217, 8VVR|1|WA|A|218, 8VVR|1|WA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|WA|C|196
8VVR|1|WA|A|197
8VVR|1|WA|A|198
8VVR|1|WA|G|199
*
8VVR|1|WA|C|215
8VVR|1|WA|C|216
8VVR|1|WA|C|217
8VVR|1|WA|A|218
8VVR|1|WA|G|219
8VVR|1|WA|C|220
8VVR|1|WA|C|221
8VVR|1|WA|C|222
*
8VVR|1|WA|G|226
8VVR|1|WA|A|227
8VVR|1|WA|C|228
*
8VVR|1|WA|G|240
8VVR|1|WA|G|241
8VVR|1|WA|U|242
8VVR|1|WA|A|243
8VVR|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26