J4_8VVR_006

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAG*CGCGCCGG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVR|1|WA|G|964, 8VVR|1|WA|C|978, 8VVR|1|WA|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|WA|C|713
8VVR|1|WA|C|714
*
8VVR|1|WA|G|960
8VVR|1|WA|A|961
8VVR|1|WA|G|962
8VVR|1|WA|G|963
8VVR|1|WA|G|964
8VVR|1|WA|A|965
8VVR|1|WA|G|966
*
8VVR|1|WA|C|976
8VVR|1|WA|G|977
8VVR|1|WA|C|978
8VVR|1|WA|G|979
8VVR|1|WA|C|980
8VVR|1|WA|C|981
8VVR|1|WA|G|982
8VVR|1|WA|G|983
*
8VVR|1|WA|C|1280
8VVR|1|WA|A|1281
8VVR|1|WA|C|1282
8VVR|1|WA|G|1283
8VVR|1|WA|G|1284
8VVR|1|WA|G|1285
8VVR|1|WA|G|1286

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

L32

Chain E

L6

Chain F

uL30