J4_8VVR_015
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8VVR|1|WA|U|4679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVR_015 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0975
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVR|1|WA|G|4589
8VVR|1|WA|U|4590
8VVR|1|WA|A|4591
8VVR|1|WA|A|4592
*
8VVR|1|WA|U|4622
8VVR|1|WA|C|4623
*
8VVR|1|WA|G|4678
8VVR|1|WA|U|4679
8VVR|1|WA|G|4680
*
8VVR|1|WA|C|4714
8VVR|1|WA|G|4715
8VVR|1|WA|C|4716
8VVR|1|WA|C|4717
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain N
- uL13
- Chain U
- L23
Coloring options: