J4_8VVR_016

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVR|1|ZA|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VVR_016 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1049

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.4

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

4

Unit IDs

8VVR|1|ZA|C|98
8VVR|1|ZA|A|99
8VVR|1|ZA|U|100
8VVR|1|ZA|U|101
8VVR|1|ZA|A|102
8VVR|1|ZA|A|103
8VVR|1|ZA|A|104
8VVR|1|ZA|U|105
8VVR|1|ZA|C|106
*
8VVR|1|ZA|G|355
8VVR|1|ZA|C|356
8VVR|1|ZA|C|357
*
8VVR|1|ZA|G|405
8VVR|1|ZA|U|406
8VVR|1|ZA|G|407
8VVR|1|ZA|A|408
8VVR|1|ZA|C|409
*
8VVR|1|ZA|G|431
8VVR|1|ZA|G|432

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8

Chain LB

S11

Chain XB

S23