J4_8VVS_001
3D structure
- PDB id
- 8VVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAG*CAU*AAGGUCC*GC
- Length
- 16 nucleotides
- Bulged bases
- 8VVS|1|SA|U|8, 8VVS|1|SA|U|47, 8VVS|1|SA|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVS|1|SA|G|7
8VVS|1|SA|U|8
8VVS|1|SA|A|9
8VVS|1|SA|G|10
*
8VVS|1|SA|C|25
8VVS|1|SA|A|26
8VVS|1|SA|U|27
*
8VVS|1|SA|A|43
8VVS|1|SA|A|44
8VVS|1|SA|G|45
8VVS|1|SA|G|46
8VVS|1|SA|U|47
8VVS|1|SA|C|48
8VVS|1|SA|C|49
*
8VVS|1|SA|G|65
8VVS|1|SA|C|66
Current chains
- Chain SA
- P-site tRNA
Nearby chains
- Chain I
- L10
- Chain PB
- S15
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
- Chain ZA
- Small subunit ribosomal RNA; SSU rRNA
- Chain ZB
- eS25
Coloring options: