J4_8VVS_004

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVS|1|WA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|111
8VVS|1|WA|C|112
*
8VVS|1|WA|G|278
8VVS|1|WA|A|279
8VVS|1|WA|G|280
8VVS|1|WA|U|281
8VVS|1|WA|C|282
8VVS|1|WA|G|283
*
8VVS|1|WA|C|304
8VVS|1|WA|A|305
8VVS|1|WA|A|306
8VVS|1|WA|A|307
8VVS|1|WA|G|308
8VVS|1|WA|C|309
8VVS|1|WA|G|310
*
8VVS|1|WA|U|327
8VVS|1|WA|A|328
8VVS|1|WA|A|329
8VVS|1|WA|G|330

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain HA

L36

Chain K

eL13

Chain M

eL15