J4_8VVS_005

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VVS|1|WA|C|216, 8VVS|1|WA|C|217, 8VVS|1|WA|A|218, 8VVS|1|WA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|196
8VVS|1|WA|A|197
8VVS|1|WA|A|198
8VVS|1|WA|G|199
*
8VVS|1|WA|C|215
8VVS|1|WA|C|216
8VVS|1|WA|C|217
8VVS|1|WA|A|218
8VVS|1|WA|G|219
8VVS|1|WA|C|220
8VVS|1|WA|C|221
8VVS|1|WA|C|222
*
8VVS|1|WA|G|226
8VVS|1|WA|A|227
8VVS|1|WA|C|228
*
8VVS|1|WA|G|240
8VVS|1|WA|G|241
8VVS|1|WA|U|242
8VVS|1|WA|A|243
8VVS|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26