J4_8VVS_006

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAG*CGCGCCGG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVS|1|WA|G|964, 8VVS|1|WA|C|978, 8VVS|1|WA|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|713
8VVS|1|WA|C|714
*
8VVS|1|WA|G|960
8VVS|1|WA|A|961
8VVS|1|WA|G|962
8VVS|1|WA|G|963
8VVS|1|WA|G|964
8VVS|1|WA|A|965
8VVS|1|WA|G|966
*
8VVS|1|WA|C|976
8VVS|1|WA|G|977
8VVS|1|WA|C|978
8VVS|1|WA|G|979
8VVS|1|WA|C|980
8VVS|1|WA|C|981
8VVS|1|WA|G|982
8VVS|1|WA|G|983
*
8VVS|1|WA|C|1280
8VVS|1|WA|A|1281
8VVS|1|WA|C|1282
8VVS|1|WA|G|1283
8VVS|1|WA|G|1284
8VVS|1|WA|G|1285
8VVS|1|WA|G|1286

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

L32

Chain E

L6

Chain F

uL30