J4_8VVS_016

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVS|1|ZA|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VVS_016 not in the Motif Atlas

Homologous match to J4_9H3G_013

Geometric discrepancy: 0.1056

The information below is about J4_9H3G_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_15241.5

Basepair signature

cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW

Number of instances in this motif group

5

Unit IDs

8VVS|1|ZA|C|98
8VVS|1|ZA|A|99
8VVS|1|ZA|U|100
8VVS|1|ZA|U|101
8VVS|1|ZA|A|102
8VVS|1|ZA|A|103
8VVS|1|ZA|A|104
8VVS|1|ZA|U|105
8VVS|1|ZA|C|106
*
8VVS|1|ZA|G|355
8VVS|1|ZA|C|356
8VVS|1|ZA|C|357
*
8VVS|1|ZA|G|405
8VVS|1|ZA|U|406
8VVS|1|ZA|G|407
8VVS|1|ZA|A|408
8VVS|1|ZA|C|409
*
8VVS|1|ZA|G|431
8VVS|1|ZA|G|432

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8

Chain LB

S11

Chain XB

S23