J4_8VWQ_008
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8VWQ|1|1|U|1971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VWQ_008 not in the Motif Atlas
- Homologous match to J4_8B0X_012
- Geometric discrepancy: 0.0575
- The information below is about J4_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.3
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VWQ|1|1|C|1833
8VWQ|1|1|U|1834
8VWQ|1|1|G|1835
*
8VWQ|1|1|C|1905
8VWQ|1|1|G|1906
*
8VWQ|1|1|C|1924
8VWQ|1|1|C|1925
8VWQ|1|1|U|1926
8VWQ|1|1|A|1927
8VWQ|1|1|A|1928
8VWQ|1|1|G|1929
8VWQ|1|1|G|1930
8VWQ|1|1|U|1931
8VWQ|1|1|A|1932
8VWQ|1|1|G|1933
*
8VWQ|1|1|C|1967
8VWQ|1|1|G|1968
8VWQ|1|1|A|1969
8VWQ|1|1|A|1970
8VWQ|1|1|U|1971
8VWQ|1|1|G|1972
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Elongation factor P
- Chain B
- 50S ribosomal protein L2
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