J4_8VWQ_011

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8VWQ|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VWQ|1|2|G|115
8VWQ|1|2|A|116
8VWQ|1|2|G|117
8VWQ|1|2|U|118
8VWQ|1|2|A|119
8VWQ|1|2|A|120
8VWQ|1|2|U|121
8VWQ|1|2|G|122
*
8VWQ|1|2|U|239
8VWQ|1|2|G|240
*
8VWQ|1|2|C|286
8VWQ|1|2|U|287
8VWQ|1|2|A|288
8VWQ|1|2|G|289
*
8VWQ|1|2|C|311
8VWQ|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

Small ribosomal subunit protein uS17