J4_8W51_009

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8W51|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8W51_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1319

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8W51|1|A|C|1833
8W51|1|A|U|1834
8W51|1|A|2MG|1835
*
8W51|1|A|C|1905
8W51|1|A|G|1906
*
8W51|1|A|C|1924
8W51|1|A|C|1925
8W51|1|A|U|1926
8W51|1|A|A|1927
8W51|1|A|A|1928
8W51|1|A|G|1929
8W51|1|A|G|1930
8W51|1|A|U|1931
8W51|1|A|A|1932
8W51|1|A|G|1933
*
8W51|1|A|C|1967
8W51|1|A|G|1968
8W51|1|A|A|1969
8W51|1|A|A|1970
8W51|1|A|U|1971
8W51|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2