J4_8WHX_002

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WHX_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1157

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8WHX|1|A|G|378
8WHX|1|A|G|379
8WHX|1|A|A|380
8WHX|1|A|A|381
8WHX|1|A|A|382
*
8WHX|1|A|U|398
8WHX|1|A|G|399
8WHX|1|A|C|400
8WHX|1|A|C|401
*
8WHX|1|A|G|405
8WHX|1|A|A|406
8WHX|1|A|C|407
*
8WHX|1|A|G|419
8WHX|1|A|G|420
8WHX|1|A|U|421
8WHX|1|A|A|422
8WHX|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24