J4_8WHX_008
3D structure
- PDB id
- 8WHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8WHX|1|A|U|2195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WHX_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.079
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
8WHX|1|A|C|2050
8WHX|1|A|U|2051
8WHX|1|A|G|2052
*
8WHX|1|A|C|2129
8WHX|1|A|G|2130
*
8WHX|1|A|C|2148
8WHX|1|A|C|2149
8WHX|1|A|U|2150
8WHX|1|A|A|2151
8WHX|1|A|A|2152
8WHX|1|A|G|2153
8WHX|1|A|G|2154
8WHX|1|A|U|2155
8WHX|1|A|A|2156
8WHX|1|A|G|2157
*
8WHX|1|A|C|2191
8WHX|1|A|G|2192
8WHX|1|A|A|2193
8WHX|1|A|A|2194
8WHX|1|A|U|2195
8WHX|1|A|G|2196
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain v
- 30S ribosomal protein S22
Coloring options: