J4_8WHX_011

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8WHX|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WHX|1|a|G|111
8WHX|1|a|A|112
8WHX|1|a|G|113
8WHX|1|a|U|114
8WHX|1|a|A|115
8WHX|1|a|A|116
8WHX|1|a|C|117
8WHX|1|a|A|118
8WHX|1|a|C|119
*
8WHX|1|a|G|238
8WHX|1|a|G|239
8WHX|1|a|C|240
*
8WHX|1|a|G|286
8WHX|1|a|U|287
8WHX|1|a|A|288
8WHX|1|a|G|289
*
8WHX|1|a|C|311
8WHX|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17