J4_8WI7_005

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8WI7|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WI7_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.099

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WI7|1|A|U|1428
8WI7|1|A|C|1429
*
8WI7|1|A|G|1453
8WI7|1|A|G|1454
8WI7|1|A|U|1455
8WI7|1|A|G|1456
8WI7|1|A|A|1457
8WI7|1|A|G|1458
*
8WI7|1|A|C|1519
8WI7|1|A|C|1520
*
8WI7|1|A|G|1815
8WI7|1|A|C|1816
8WI7|1|A|C|1817
8WI7|1|A|C|1818
8WI7|1|A|G|1819
8WI7|1|A|U|1820
8WI7|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23