J4_8WI7_008

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8WI7|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WI7_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1011

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8WI7|1|A|C|2050
8WI7|1|A|U|2051
8WI7|1|A|G|2052
*
8WI7|1|A|C|2129
8WI7|1|A|G|2130
*
8WI7|1|A|C|2148
8WI7|1|A|C|2149
8WI7|1|A|U|2150
8WI7|1|A|A|2151
8WI7|1|A|A|2152
8WI7|1|A|G|2153
8WI7|1|A|G|2154
8WI7|1|A|U|2155
8WI7|1|A|A|2156
8WI7|1|A|G|2157
*
8WI7|1|A|C|2191
8WI7|1|A|G|2192
8WI7|1|A|A|2193
8WI7|1|A|A|2194
8WI7|1|A|U|2195
8WI7|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

30S ribosomal protein S22