J4_8WI7_010

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WI7_010 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.1242

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8WI7|1|A|A|2867
8WI7|1|A|A|2868
8WI7|1|A|C|2869
8WI7|1|A|C|2870
*
8WI7|1|A|G|2898
8WI7|1|A|A|2899
8WI7|1|A|C|2900
*
8WI7|1|A|G|2955
8WI7|1|A|G|2956
8WI7|1|A|A|2957
8WI7|1|A|C|2958
8WI7|1|A|A|2959
*
8WI7|1|A|U|2993
8WI7|1|A|C|2994
8WI7|1|A|U|2995

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14