J4_8WI9_001

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8WI9|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WI9|1|a|G|111
8WI9|1|a|A|112
8WI9|1|a|G|113
8WI9|1|a|U|114
8WI9|1|a|A|115
8WI9|1|a|A|116
8WI9|1|a|C|117
8WI9|1|a|A|118
8WI9|1|a|C|119
*
8WI9|1|a|G|238
8WI9|1|a|G|239
8WI9|1|a|C|240
*
8WI9|1|a|G|286
8WI9|1|a|U|287
8WI9|1|a|A|288
8WI9|1|a|G|289
*
8WI9|1|a|C|311
8WI9|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17