J4_8WIB_008

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8WIB|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIB_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.089

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8WIB|1|A|C|2050
8WIB|1|A|U|2051
8WIB|1|A|G|2052
*
8WIB|1|A|C|2129
8WIB|1|A|G|2130
*
8WIB|1|A|C|2148
8WIB|1|A|C|2149
8WIB|1|A|U|2150
8WIB|1|A|A|2151
8WIB|1|A|A|2152
8WIB|1|A|G|2153
8WIB|1|A|G|2154
8WIB|1|A|U|2155
8WIB|1|A|A|2156
8WIB|1|A|G|2157
*
8WIB|1|A|C|2191
8WIB|1|A|G|2192
8WIB|1|A|A|2193
8WIB|1|A|A|2194
8WIB|1|A|U|2195
8WIB|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain v

30S ribosomal protein S22