J4_8WIC_002

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1212

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8WIC|1|A|G|378
8WIC|1|A|G|379
8WIC|1|A|A|380
8WIC|1|A|A|381
8WIC|1|A|A|382
*
8WIC|1|A|U|398
8WIC|1|A|G|399
8WIC|1|A|C|400
8WIC|1|A|C|401
*
8WIC|1|A|G|405
8WIC|1|A|A|406
8WIC|1|A|C|407
*
8WIC|1|A|G|419
8WIC|1|A|G|420
8WIC|1|A|U|421
8WIC|1|A|A|422
8WIC|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24