J4_8WIC_010

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AACC*GAC*GGACA*UCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_010 not in the Motif Atlas

Homologous match to J4_4WF9_009

Geometric discrepancy: 0.118

The information below is about J4_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.5

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8WIC|1|A|A|2867
8WIC|1|A|A|2868
8WIC|1|A|C|2869
8WIC|1|A|C|2870
*
8WIC|1|A|G|2898
8WIC|1|A|A|2899
8WIC|1|A|C|2900
*
8WIC|1|A|G|2955
8WIC|1|A|G|2956
8WIC|1|A|A|2957
8WIC|1|A|C|2958
8WIC|1|A|A|2959
*
8WIC|1|A|U|2993
8WIC|1|A|C|2994
8WIC|1|A|U|2995

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14