J4_8WIC_011

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGG*CGU*AAGAUCG*CC

Length

16 nucleotides

Bulged bases

8WIC|1|C|U|8, 8WIC|1|C|U|47, 8WIC|1|C|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_011 not in the Motif Atlas

Homologous match to J4_6CFJ_015

Geometric discrepancy: 0.2521

The information below is about J4_6CFJ_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8WIC|1|C|G|7
8WIC|1|C|U|8
8WIC|1|C|G|9
8WIC|1|C|G|10
*
8WIC|1|C|C|25
8WIC|1|C|G|26
8WIC|1|C|U|27
*
8WIC|1|C|A|43
8WIC|1|C|A|44
8WIC|1|C|G|45
8WIC|1|C|A|46
8WIC|1|C|U|47
8WIC|1|C|C|48
8WIC|1|C|G|49
*
8WIC|1|C|C|65
8WIC|1|C|C|66

Current chains

Chain C

E-tRNA

Nearby chains

Chain 6

50S ribosomal protein L33A