J4_8WID_001

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

8WID|1|a|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WID|1|a|G|111
8WID|1|a|A|112
8WID|1|a|G|113
8WID|1|a|U|114
8WID|1|a|A|115
8WID|1|a|A|116
8WID|1|a|C|117
8WID|1|a|A|118
8WID|1|a|C|119
*
8WID|1|a|G|238
8WID|1|a|G|239
8WID|1|a|C|240
*
8WID|1|a|G|286
8WID|1|a|U|287
8WID|1|a|A|288
8WID|1|a|G|289
*
8WID|1|a|C|311
8WID|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17