J4_8WID_004

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UU*AAUACAC*GGAAAG*CG

Length

17 nucleotides

Bulged bases

8WID|1|a|C|179, 8WID|1|a|A|180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WID|1|a|U|140
8WID|1|a|U|141
*
8WID|1|a|A|175
8WID|1|a|A|176
8WID|1|a|U|177
8WID|1|a|A|178
8WID|1|a|C|179
8WID|1|a|A|180
8WID|1|a|C|181
*
8WID|1|a|G|207
8WID|1|a|G|208
8WID|1|a|A|209
8WID|1|a|A|210
8WID|1|a|A|211
8WID|1|a|G|212
*
8WID|1|a|C|219
8WID|1|a|G|220

Current chains

Chain a

16S rRNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20