J4_8XSX_004

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8XSX|1|L5|G|1271, 8XSX|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSX|1|L5|C|981
8XSX|1|L5|U|982
8XSX|1|L5|C|983
*
8XSX|1|L5|G|1070
8XSX|1|L5|C|1071
8XSX|1|L5|C|1072
*
8XSX|1|L5|G|1240
8XSX|1|L5|C|1241
8XSX|1|L5|G|1242
8XSX|1|L5|C|1243
*
8XSX|1|L5|G|1268
8XSX|1|L5|G|1269
8XSX|1|L5|A|1270
8XSX|1|L5|G|1271
8XSX|1|L5|C|1272
8XSX|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29