J4_8XSX_010

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8XSX|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XSX_010 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1299

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8XSX|1|L5|C|3696
8XSX|1|L5|U|3697
8XSX|1|L5|G|3698
*
8XSX|1|L5|C|3752
8XSX|1|L5|G|3753
*
8XSX|1|L5|C|3771
8XSX|1|L5|U|3772
8XSX|1|L5|U|3773
8XSX|1|L5|A|3774
8XSX|1|L5|A|3775
8XSX|1|L5|G|3776
8XSX|1|L5|G|3777
8XSX|1|L5|U|3778
8XSX|1|L5|A|3779
8XSX|1|L5|G|3780
*
8XSX|1|L5|U|3814
8XSX|1|L5|G|3815
8XSX|1|L5|A|3816
8XSX|1|L5|A|3817
8XSX|1|L5|U|3818
8XSX|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA