J4_8XSY_010
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8XSY|1|L5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XSY_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1055
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XSY|1|L5|C|3696
8XSY|1|L5|U|3697
8XSY|1|L5|G|3698
*
8XSY|1|L5|C|3752
8XSY|1|L5|G|3753
*
8XSY|1|L5|C|3771
8XSY|1|L5|U|3772
8XSY|1|L5|U|3773
8XSY|1|L5|A|3774
8XSY|1|L5|A|3775
8XSY|1|L5|G|3776
8XSY|1|L5|G|3777
8XSY|1|L5|U|3778
8XSY|1|L5|A|3779
8XSY|1|L5|G|3780
*
8XSY|1|L5|U|3814
8XSY|1|L5|G|3815
8XSY|1|L5|A|3816
8XSY|1|L5|A|3817
8XSY|1|L5|U|3818
8XSY|1|L5|G|3819
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: