J4_8XSZ_005

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8XSZ|1|L5|G|1271, 8XSZ|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|C|981
8XSZ|1|L5|U|982
8XSZ|1|L5|C|983
*
8XSZ|1|L5|G|1070
8XSZ|1|L5|C|1071
8XSZ|1|L5|C|1072
*
8XSZ|1|L5|G|1240
8XSZ|1|L5|C|1241
8XSZ|1|L5|G|1242
8XSZ|1|L5|C|1243
*
8XSZ|1|L5|G|1268
8XSZ|1|L5|G|1269
8XSZ|1|L5|A|1270
8XSZ|1|L5|G|1271
8XSZ|1|L5|C|1272
8XSZ|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29