J4_8XT0_004

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CC*GCAAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8XT0|1|L1|U|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XT0_004 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1412

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8XT0|1|L1|C|874
8XT0|1|L1|U|875
8XT0|1|L1|G|876
*
8XT0|1|L1|C|899
8XT0|1|L1|C|900
*
8XT0|1|L1|G|917
8XT0|1|L1|C|918
8XT0|1|L1|A|919
8XT0|1|L1|A|920
8XT0|1|L1|A|921
8XT0|1|L1|G|922
8XT0|1|L1|G|923
8XT0|1|L1|U|924
8XT0|1|L1|A|925
8XT0|1|L1|G|926
*
8XT0|1|L1|U|960
8XT0|1|L1|G|961
8XT0|1|L1|A|962
8XT0|1|L1|A|963
8XT0|1|L1|U|964
8XT0|1|L1|G|965

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38