J4_8XT0_007

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAAUAG*CCCUAAACCUCA*UC

Length

23 nucleotides

Bulged bases

8XT0|1|S1|A|295, 8XT0|1|S1|A|456, 8XT0|1|S1|C|459, 8XT0|1|S1|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XT0_007 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.239

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

8XT0|1|S1|G|294
8XT0|1|S1|A|295
8XT0|1|S1|G|296
*
8XT0|1|S1|C|405
8XT0|1|S1|A|406
8XT0|1|S1|A|407
8XT0|1|S1|U|408
8XT0|1|S1|A|409
8XT0|1|S1|G|410
*
8XT0|1|S1|C|451
8XT0|1|S1|C|452
8XT0|1|S1|C|453
8XT0|1|S1|U|454
8XT0|1|S1|A|455
8XT0|1|S1|A|456
8XT0|1|S1|A|457
8XT0|1|S1|C|458
8XT0|1|S1|C|459
8XT0|1|S1|U|460
8XT0|1|S1|C|461
8XT0|1|S1|A|462
*
8XT0|1|S1|U|485
8XT0|1|S1|C|486

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS12m

Chain SO

Small ribosomal subunit protein uS15m

Chain SQ

Small ribosomal subunit protein uS17m

Chain SW

Small ribosomal subunit protein bS21m

Chain Sa

Small ribosomal subunit protein mS25

Chain Sm

Small ribosomal subunit protein mS37

Chain Sn

Small ribosomal subunit protein mS38