J4_8XT1_003

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT1|1|L1|G|822
8XT1|1|L1|C|823
8XT1|1|L1|C|824
8XT1|1|L1|U|825
8XT1|1|L1|G|826
*
8XT1|1|L1|C|838
8XT1|1|L1|A|839
8XT1|1|L1|U|840
8XT1|1|L1|C|841
8XT1|1|L1|A|842
8XT1|1|L1|C|843
*
8XT1|1|L1|G|867
8XT1|1|L1|C|868
8XT1|1|L1|A|869
8XT1|1|L1|C|870
8XT1|1|L1|C|871
8XT1|1|L1|G|872
*
8XT1|1|L1|C|967
8XT1|1|L1|U|968
8XT1|1|L1|C|969
8XT1|1|L1|C|970
8XT1|1|L1|A|971
8XT1|1|L1|C|972

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m