J4_8XT2_002

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAGCCUGCG*CAAUUAAC*GUCAACC*GCA

Length

28 nucleotides

Bulged bases

8XT2|1|L1|U|702, 8XT2|1|L1|A|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|L1|U|666
8XT2|1|L1|A|667
8XT2|1|L1|A|668
8XT2|1|L1|G|669
8XT2|1|L1|C|670
8XT2|1|L1|C|671
8XT2|1|L1|U|672
8XT2|1|L1|G|673
8XT2|1|L1|C|674
8XT2|1|L1|G|675
*
8XT2|1|L1|C|698
8XT2|1|L1|A|699
8XT2|1|L1|A|700
8XT2|1|L1|U|701
8XT2|1|L1|U|702
8XT2|1|L1|A|703
8XT2|1|L1|A|704
8XT2|1|L1|C|705
*
8XT2|1|L1|G|751
8XT2|1|L1|U|752
8XT2|1|L1|C|753
8XT2|1|L1|A|754
8XT2|1|L1|A|755
8XT2|1|L1|C|756
8XT2|1|L1|C|757
*
8XT2|1|L1|G|766
8XT2|1|L1|C|767
8XT2|1|L1|A|768

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LW

Large ribosomal subunit protein uL23m

Chain Lh

Large ribosomal subunit protein bL34m

Chain Lo

Large ribosomal subunit protein mL41

Chain Lu

Large ribosomal subunit protein uL29m

Chain Sf

Large ribosomal subunit protein mL65