J4_8XT2_003

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT2|1|L1|G|822
8XT2|1|L1|C|823
8XT2|1|L1|C|824
8XT2|1|L1|U|825
8XT2|1|L1|G|826
*
8XT2|1|L1|C|838
8XT2|1|L1|A|839
8XT2|1|L1|U|840
8XT2|1|L1|C|841
8XT2|1|L1|A|842
8XT2|1|L1|C|843
*
8XT2|1|L1|G|867
8XT2|1|L1|C|868
8XT2|1|L1|A|869
8XT2|1|L1|C|870
8XT2|1|L1|C|871
8XT2|1|L1|G|872
*
8XT2|1|L1|C|967
8XT2|1|L1|U|968
8XT2|1|L1|C|969
8XT2|1|L1|C|970
8XT2|1|L1|A|971
8XT2|1|L1|C|972

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38