J4_8XZ3_002

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAA*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XZ3_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1094

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|G|378
8XZ3|1|A|G|379
8XZ3|1|A|A|380
8XZ3|1|A|A|381
8XZ3|1|A|A|382
*
8XZ3|1|A|U|398
8XZ3|1|A|G|399
8XZ3|1|A|C|400
8XZ3|1|A|C|401
*
8XZ3|1|A|G|405
8XZ3|1|A|A|406
8XZ3|1|A|C|407
*
8XZ3|1|A|G|419
8XZ3|1|A|G|420
8XZ3|1|A|U|421
8XZ3|1|A|A|422
8XZ3|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL24