J4_8XZ3_008

3D structure

PDB id

8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8XZ3|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XZ3_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1458

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8XZ3|1|A|C|2050
8XZ3|1|A|U|2051
8XZ3|1|A|G|2052
*
8XZ3|1|A|C|2129
8XZ3|1|A|G|2130
*
8XZ3|1|A|C|2148
8XZ3|1|A|C|2149
8XZ3|1|A|U|2150
8XZ3|1|A|A|2151
8XZ3|1|A|A|2152
8XZ3|1|A|G|2153
8XZ3|1|A|G|2154
8XZ3|1|A|U|2155
8XZ3|1|A|A|2156
8XZ3|1|A|G|2157
*
8XZ3|1|A|C|2191
8XZ3|1|A|G|2192
8XZ3|1|A|A|2193
8XZ3|1|A|A|2194
8XZ3|1|A|U|2195
8XZ3|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2