3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
UC*GAGUCGA*UCUAAGUG*UAAA
Length
21 nucleotides
Bulged bases
8Y0U|1|C1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8Y0U|1|C1|U|112
8Y0U|1|C1|C|113
*
8Y0U|1|C1|G|267
8Y0U|1|C1|A|268
8Y0U|1|C1|G|269
8Y0U|1|C1|U|270
8Y0U|1|C1|C|271
8Y0U|1|C1|G|272
8Y0U|1|C1|A|273
*
8Y0U|1|C1|U|292
8Y0U|1|C1|C|293
8Y0U|1|C1|U|294
8Y0U|1|C1|A|295
8Y0U|1|C1|A|296
8Y0U|1|C1|G|297
8Y0U|1|C1|U|298
8Y0U|1|C1|G|299
*
8Y0U|1|C1|U|316
8Y0U|1|C1|A|317
8Y0U|1|C1|A|318
8Y0U|1|C1|A|319

Current chains

Chain C1
25S rRNA

Nearby chains

Chain LL
Large ribosomal subunit protein eL13A
Chain LN
Large ribosomal subunit protein eL15A
Chain Lh
Large ribosomal subunit protein uL29A
Chain Li
Large ribosomal subunit protein eL36A

Coloring options:

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