J4_8Y0U_011
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUGC*GUU
- Length
- 25 nucleotides
- Bulged bases
- 8Y0U|1|C2|A|623, 8Y0U|1|C2|A|1026, 8Y0U|1|C2|U|1029, 8Y0U|1|C2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y0U|1|C2|A|622
8Y0U|1|C2|A|623
8Y0U|1|C2|G|624
*
8Y0U|1|C2|C|975
8Y0U|1|C2|G|976
8Y0U|1|C2|A|977
8Y0U|1|C2|A|978
8Y0U|1|C2|A|979
8Y0U|1|C2|G|980
*
8Y0U|1|C2|C|1021
8Y0U|1|C2|C|1022
8Y0U|1|C2|A|1023
8Y0U|1|C2|U|1024
8Y0U|1|C2|A|1025
8Y0U|1|C2|A|1026
8Y0U|1|C2|A|1027
8Y0U|1|C2|C|1028
8Y0U|1|C2|U|1029
8Y0U|1|C2|A|1030
8Y0U|1|C2|U|1031
8Y0U|1|C2|G|1032
8Y0U|1|C2|C|1033
*
8Y0U|1|C2|G|1102
8Y0U|1|C2|U|1103
8Y0U|1|C2|U|1104
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain Ln
- Large ribosomal subunit protein eL41A
- Chain SL
- Small ribosomal subunit protein uS17A
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- Small ribosomal subunit protein uS11B
- Chain SW
- 40S ribosomal protein S22-A
- Chain SX
- 40S ribosomal protein S23-A
- Chain Sa
- Small ribosomal subunit protein eS26B
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