J4_8Y0W_002

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0W|1|L5|C|196
8Y0W|1|L5|A|197
8Y0W|1|L5|A|198
8Y0W|1|L5|G|199
*
8Y0W|1|L5|C|215
8Y0W|1|L5|C|216
8Y0W|1|L5|C|217
8Y0W|1|L5|A|218
8Y0W|1|L5|G|219
8Y0W|1|L5|C|220
8Y0W|1|L5|C|221
8Y0W|1|L5|C|222
*
8Y0W|1|L5|G|226
8Y0W|1|L5|A|227
8Y0W|1|L5|C|228
*
8Y0W|1|L5|G|240
8Y0W|1|L5|G|241
8Y0W|1|L5|U|242
8Y0W|1|L5|A|243
8Y0W|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26