J4_8Y0X_010

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

8Y0X|1|L5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y0X|1|L5|G|4587
8Y0X|1|L5|U|4588
8Y0X|1|L5|A|4589
8Y0X|1|L5|A|4590
*
8Y0X|1|L5|U|4620
8Y0X|1|L5|C|4621
*
8Y0X|1|L5|G|4676
8Y0X|1|L5|U|4677
8Y0X|1|L5|G|4678
*
8Y0X|1|L5|C|4712
8Y0X|1|L5|G|4713
8Y0X|1|L5|C|4714
8Y0X|1|L5|C|4715

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23