J4_8Y38_004
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAAG*CC*GAGCG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8Y38|1|A|G|1309, 8Y38|1|A|A|1310, 8Y38|1|A|A|1312, 8Y38|1|A|G|1691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|A|C|1308
8Y38|1|A|G|1309
8Y38|1|A|A|1310
8Y38|1|A|A|1311
8Y38|1|A|A|1312
8Y38|1|A|G|1313
*
8Y38|1|A|C|1331
8Y38|1|A|C|1332
*
8Y38|1|A|G|1689
8Y38|1|A|A|1690
8Y38|1|A|G|1691
8Y38|1|A|C|1692
8Y38|1|A|G|1693
*
8Y38|1|A|C|2035
8Y38|1|A|G|2036
8Y38|1|A|G|2037
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain L
- Large ribosomal subunit protein bL17
- Chain Q
- Large ribosomal subunit protein uL22
- Chain Z
- Large ribosomal subunit protein bL32
Coloring options: