J4_8Y38_005

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8Y38|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|A|G|1347
8Y38|1|A|U|1348
8Y38|1|A|U|1349
8Y38|1|A|U|1350
8Y38|1|A|C|1351
*
8Y38|1|A|G|1375
8Y38|1|A|G|1376
8Y38|1|A|U|1377
8Y38|1|A|U|1378
8Y38|1|A|A|1379
8Y38|1|A|G|1380
*
8Y38|1|A|C|1441
8Y38|1|A|C|1442
*
8Y38|1|A|G|1641
8Y38|1|A|C|1642
8Y38|1|A|C|1643
8Y38|1|A|C|1644
8Y38|1|A|G|1645
8Y38|1|A|U|1646
8Y38|1|A|A|1647
8Y38|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain R

Large ribosomal subunit protein uL23