J4_8Y38_012

3D structure

PDB id

8Y38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAC*GAUAAUAU*AAGUGAAAG*UCAC

Length

24 nucleotides

Bulged bases

8Y38|1|a|U|183, 8Y38|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y38|1|a|G|142
8Y38|1|a|A|143
8Y38|1|a|C|144
*
8Y38|1|a|G|178
8Y38|1|a|A|179
8Y38|1|a|U|180
8Y38|1|a|A|181
8Y38|1|a|A|182
8Y38|1|a|U|183
8Y38|1|a|A|184
8Y38|1|a|U|185
*
8Y38|1|a|A|205
8Y38|1|a|A|206
8Y38|1|a|G|207
8Y38|1|a|U|208
8Y38|1|a|G|209
8Y38|1|a|A|210
8Y38|1|a|A|211
8Y38|1|a|A|212
8Y38|1|a|G|213
*
8Y38|1|a|U|226
8Y38|1|a|C|227
8Y38|1|a|A|228
8Y38|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20