J4_8Y38_015
3D structure
- PDB id
- 8Y38 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus 70S ribosome (strain 15B196) in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CUGC*GCG*CCUAAGGUAG*CGAAAG
- Length
- 23 nucleotides
- Bulged bases
- 8Y38|1|A|A|1998
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y38|1|A|C|1860
8Y38|1|A|U|1861
8Y38|1|A|G|1862
8Y38|1|A|C|1863
*
8Y38|1|A|G|1931
8Y38|1|A|C|1932
8Y38|1|A|G|1933
*
8Y38|1|A|C|1951
8Y38|1|A|C|1952
8Y38|1|A|U|1953
8Y38|1|A|A|1954
8Y38|1|A|A|1955
8Y38|1|A|G|1956
8Y38|1|A|G|1957
8Y38|1|A|U|1958
8Y38|1|A|A|1959
8Y38|1|A|G|1960
*
8Y38|1|A|C|1994
8Y38|1|A|G|1995
8Y38|1|A|A|1996
8Y38|1|A|A|1997
8Y38|1|A|A|1998
8Y38|1|A|G|1999
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: