J4_8Y39_002

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAU*AAUC*GAA*UGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8Y39_002 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0765

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8Y39|1|A|C|340
8Y39|1|A|G|341
8Y39|1|A|A|342
8Y39|1|A|A|343
8Y39|1|A|U|344
*
8Y39|1|A|A|359
8Y39|1|A|A|360
8Y39|1|A|U|361
8Y39|1|A|C|362
*
8Y39|1|A|G|366
8Y39|1|A|A|367
8Y39|1|A|A|368
*
8Y39|1|A|U|380
8Y39|1|A|G|381
8Y39|1|A|U|382
8Y39|1|A|A|383
8Y39|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain S

Large ribosomal subunit protein uL24