J4_8Y39_003
3D structure
- PDB id
- 8Y39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGUAG*CGAG*CGUUUAG
- Length
- 20 nucleotides
- Bulged bases
- 8Y39|1|A|U|698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Y39_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.503
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y39|1|A|C|644
8Y39|1|A|A|645
8Y39|1|A|A|646
8Y39|1|A|G|647
*
8Y39|1|A|C|669
8Y39|1|A|G|670
8Y39|1|A|U|671
8Y39|1|A|A|672
8Y39|1|A|G|673
*
8Y39|1|A|C|680
8Y39|1|A|G|681
8Y39|1|A|A|682
8Y39|1|A|G|683
*
8Y39|1|A|C|695
8Y39|1|A|G|696
8Y39|1|A|U|697
8Y39|1|A|U|698
8Y39|1|A|U|699
8Y39|1|A|A|700
8Y39|1|A|G|701
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL35
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL15
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