J4_8Y39_004

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG*CC*GAGCG*CGG

Length

16 nucleotides

Bulged bases

8Y39|1|A|G|1309, 8Y39|1|A|A|1310, 8Y39|1|A|A|1312, 8Y39|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|C|1308
8Y39|1|A|G|1309
8Y39|1|A|A|1310
8Y39|1|A|A|1311
8Y39|1|A|A|1312
8Y39|1|A|G|1313
*
8Y39|1|A|C|1331
8Y39|1|A|C|1332
*
8Y39|1|A|G|1689
8Y39|1|A|A|1690
8Y39|1|A|G|1691
8Y39|1|A|C|1692
8Y39|1|A|G|1693
*
8Y39|1|A|C|2035
8Y39|1|A|G|2036
8Y39|1|A|G|2037

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein bL17

Chain Q

Large ribosomal subunit protein uL22

Chain Z

Large ribosomal subunit protein bL32