J4_8Y39_005

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8Y39|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|G|1347
8Y39|1|A|U|1348
8Y39|1|A|U|1349
8Y39|1|A|U|1350
8Y39|1|A|C|1351
*
8Y39|1|A|G|1375
8Y39|1|A|G|1376
8Y39|1|A|U|1377
8Y39|1|A|U|1378
8Y39|1|A|A|1379
8Y39|1|A|G|1380
*
8Y39|1|A|C|1441
8Y39|1|A|C|1442
*
8Y39|1|A|G|1641
8Y39|1|A|C|1642
8Y39|1|A|C|1643
8Y39|1|A|C|1644
8Y39|1|A|G|1645
8Y39|1|A|U|1646
8Y39|1|A|A|1647
8Y39|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain R

Large ribosomal subunit protein uL23