J4_8Y39_006

3D structure

PDB id

8Y39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 70S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAG*UC*GGGAGA*UCGAGU

Length

17 nucleotides

Bulged bases

8Y39|1|A|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Y39|1|A|A|1488
8Y39|1|A|A|1489
8Y39|1|A|G|1490
*
8Y39|1|A|U|1510
8Y39|1|A|C|1511
*
8Y39|1|A|G|1570
8Y39|1|A|G|1571
8Y39|1|A|G|1572
8Y39|1|A|A|1573
8Y39|1|A|G|1574
8Y39|1|A|A|1575
*
8Y39|1|A|U|1589
8Y39|1|A|C|1590
8Y39|1|A|G|1591
8Y39|1|A|A|1592
8Y39|1|A|G|1593
8Y39|1|A|U|1594

Current chains

Chain A

23S ribosomal RNA

Nearby chains